Articles

Identification and characterization of methoxy- and dimethoxyhydroquinone 1,2-dioxygenase from Phanerochaete chrysosporium.

Hiroyuki Kato, Yasushi Takahashi, Hiromitsu Suzuki, Keisuke Ohashi, Ryunosuke Kawashima, Koki Nakamura, Kiyota Sakai, Chiaki Hori, Taichi E Takasuka, Masashi Kato, Motoyuki Shimizu.

Applied and environmental microbiology e0175323 

Genomic and Secretomic Analyses of the Newly Isolated Fungus Perenniporia fraxinea SS3 Identified CAZymes Potentially Related to a Serious Pathogenesis of Hardwood Trees

Ruy Matsumoto, Jakia Jerin Mehjabin, Hideki Noguchi, Toshizumi Miyamoto, Taichi E Takasuka, Chiaki Hori*

Applied and environmental microbiology e0027223 (2023)

Omics analyses and biochemical study of Phlebiopsis gigantea elucidate its degradation strategy of wood extractives.

Mana Iwata, Ana Gutiérrez, Gisela Marques, Grzegorz Sabat, Philip J Kersten, Daniel Cullen, Jennifer M Bhatnagar, Jagjit Yadav, Anna Lipzen, Yuko Yoshinaga, Aditi Sharma, Catherine Adam, Christopher Daum, Vivian Ng, Igor V Grigoriev, Chiaki Hori*

SCIENTIFIC REPORTS 11(1) 12528-12528 (2021)

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Transport-coupled ubiquitination of a borate transporter BOR1 for boron-dependent degradation. 

Akira Yoshinari, Takuya Hosokawa, Marcel  Pascal Beier, Keishi Oshima, Yuka Ogino, Chiaki Hori, Taichi E Takasuka, Yoichiro Fukao, Toru Fujiwara, Junpei Takano

THE PLANT CELL (2021)

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Identifying transcription factors that reduce wood recalcitrance and improve enzymatic degradation of xylem cell wall in Populus

Chiaki Hori*, Naoki Tanata, Pui Ying Lam, Yuki Tobimatsu, Soichiro Nagano, Jenny C. Mortimer, Dan Cullen

SCIENTIFIC REPORTS 10(1) (2020)

Isolation of poly[D-lactate (LA)-co-3-hydroxybutyrate)]-degrading bacteria from soil and characterization of D-LA homo-oligomer degradation by the isolated strains

Chiaki Hori, Tomohiro Sugiyama, Kodai Watanabe, Jian Sun, Yuu Kamada, Toshihiko Ooi, Takuya Isono, Toshifumi Satoh, Shin-ichiro Sato, Seiichi Taguchi, Ken'ichiro Matsumoto

POLYMER DEGRADATION AND STABILITY 179 109231-109231 (2020)

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Impact of abiotic stress on the regulation of cell wall biosynthesis in Populus trichocarpa

Chiaki Hori, Xiang Yu, Jenny C. Mortimer, Ryosuke Sano, Tomoko Matsumoto, Jun Kikuchi, Taku Demura, Misato Ohtani

PLANT BIOTECHNOLOGY 37(3) 273-283 (2020)

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Proteomic Characterization of Lignocellulolytic Enzymes Secreted by the Insect-Associated Fungus Daldinia decipiens oita, Isolated from a Forest in Northern Japan

Chiaki Hori*, Ruopu Song, Kazuki Matsumoto, Ruy Matsumoto, Benjamin B. Minkoff, Shuzo Oita, Hideho Hara, Taichi E. Takasuka

APPLIED AND ENVIRONMENTAL MICROBIOLOGY 86(8) (2020)

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Synergy of valine and threonine supplementation on poly(2-hydroxybutyrate-block-3-hydroxybutyrate) synthesis in engineered Escherichia coli expressing chimeric polyhydroxyalkanoate synthase.

Maho Sudo, Chiaki Hori, Toshihiko Ooi, Shoji Mizuno, Takeharu Tsuge, Ken'ichiro Matsumoto

Journal of Bioscience and Bioengineering (2019)

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Genome Sequence of Striga asiatica Provides Insight into the Evolution of Plant Parasitism

Satoko Yoshida, Seungill Kim, Eric K. Wafula, Jaakko Tanskanen, Yong-Min Kim, Loren Honaas, Zhenzhen Yang, Thomas Spallek, Caitlin E. Conn, Yasunori Ichihashi, Kyeongchae Cheong, Songkui Cui, Joshua P. Der, Heidrun Gundlach, Yuannian Jiao, Chiaki Hori, Juliane K. Ishida, Hiroyuki Kasahara, Takatoshi Kiba, Myung-Shin Kim, Namjin Koo, Anuphon Laohavisit, Yong-Hwan Lee, Shelley Lumba, Peter McCourt, Jenny C. Mortimer, J. Musembi Mutuku, Takahito Nomura, Yuko Sasaki-Sekimoto, Yoshiya Seto, Yu Wang, Takanori Wakatake, Hitoshi Sakakibara, Taku Demura, Shinjiro Yamaguchi, Koichi Yoneyama, Ri-ichiroh Manabe, David C. Nelson, Alan H. Schulman, Michael P. Timko, Claude W. DePamphilis, Doil Choi, Ken Shirasu

CURRENT BIOLOGY 29(18) 3041  (2019)

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Ribulose-1,5-bisphosphate carboxylase/oxygenase (RuBisCO)-mediated de novo synthesis of glycolate-based polyhydroxyalkanoate in Escherichia coli

Ken'ichiro Matsumoto, Jun Saito, Toshinori Yokoo, Chiaki Hori, Akihiro Nagata, Yuki Kudoh, Toshihiko Ooi, Seiichi Taguchi

JOURNAL OF BIOSCIENCE AND BIOENGINEERING 128(3) 302-306 (2019)

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High-cell density culture of poly(lactate-co-3-hydroxybutyrate)-producing Escherichia coli by using glucose/xylose-switching fed-batch jar fermentation

Chiaki Hori, Takashi Yamazaki, Greg Ribordy, Kenji Takisawa, Ken'ichiro Matsumoto, Toshihiko Ooi, Manfred Zinn, Seiichi Taguchi

JOURNAL OF BIOSCIENCE AND BIOENGINEERING 127(6) 721-725 (2019)

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The Structural Integrity of Lignin Is Crucial for Resistance against Striga hermonthica Parasitism in Rice

J. Musembi Mutuku, Songkui Cui, Chiaki Hori, Yuri Takeda, Yuki Tobimatsu, Ryo Nakabayashi, Tetsuya Mori, Kazuki Saito, Taku Demura, Toshiaki Umezawa, Satoko Yoshida, Ken Shirasu

PLANT PHYSIOLOGY 179(4) 1796-1809 (2019)

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Genomes of Neutrophilic Sulfur-Oxidizing Chemolithoautotrophs Representing 9 Proteobacterial Species From 8 Genera

Tomohiro Watanabe, Hisaya Kojima, Kazuhiro Umezawa, Chiaki Hori, Taichi E. Takasuka, Yukako Kato, Manabu Fukui

FRONTIERS IN MICROBIOLOGY 10 316 (2019)

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Protein components of water extracts from fruiting bodies of the reishi mushroom Ganoderma lucidum contribute to the production of functional molecules

Kei Kumakura†, Chiaki Hori†, Hiroki Matsuoka, Kiyohiko Igarashi, Masahiro Samejima　†共同筆頭著者

JOURNAL OF THE SCIENCE OF FOOD AND AGRICULTURE 99(2) 529-535 (2019)

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Origin and Diversity of Wood Decay Fungi Revealed by Genome-Based Analyses

Chiaki Hori, Makoto Yoshida, Kiyohiko Igarashi, Masahiro Samejima

J. Jpn. Wood Sci. Soc. 65(4) 173-188 (2019)

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Secretome analysis of the basidiomycete Phanerochaete chrysosporium grown on ammonia-treated lignocellulosic biomass from birch wood

Kiyoshi Sakuragi, Chiaki Hori, Kiyohiko Igarashi, Masahiro Samejima

JOURNAL OF WOOD SCIENCE 64(6) 845-853 (2018)

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Multi-omit Analyses of Extensively Decayed Pinus contorta Reveal Expression of a Diverse Array of Lignocellulose-Degrading Enzymes

Chiaki Hori, Jill Gaskell, Dan Cullen, Grzegorz Sabat, Philip E. Stewart, Kathleen Lail, Yi Peng, Kerrie Barry, Igor V. Grigoriev, Annegret Kohler, Laure Fauchery, Francis Martin, Carolyn A. Zeiner, Jennifer M. Bhatnagar

APPLIED AND ENVIRONMENTAL MICROBIOLOGY 84(20) (2018)

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In Vitro Analysis of D-Lactyl-CoA-Polymerizing Polyhydroxyalkanoate Synthase in Polylactate and Poly(lactate-co-3-hydroxybutyrate) Syntheses

Ken'ichiro Matsumoto, Midori Iijima, Chiaki Hori, Camila Utsunomia, Toshihiko Ooi, Seiichi Taguchi

BIOMACROMOLECULES 19(7) 2889-2895 (2018)

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Site-directed saturation mutagenesis of polyhydroxylalkanoate synthase for efficient microbial production of poly[(R)-2-hydroxybutyrate]

Chiaki Hori, Kenta Oishi, Ken'ichiro Matsumoto, Seiichi Taguchi, Toshihiko Ooi

JOURNAL OF BIOSCIENCE AND BIOENGINEERING 125(6) 632-636 (2018)

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Dynamic Changes of Intracellular Monomer Levels Regulate Block Sequence of Polyhydroxyalkanoates in Engineered Escherichia coil

Ken'ichiro Matsumoto, Chiaki Hori, Ryunosuke Fujii, Masahiro Takaya, Takashi Ooba, Toshihiko Ooi, Takuya Isono, Toshifumi Satoh, Seiichi Taguchi

BIOMACROMOLECULES 19(2) 662-671 (2018)

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Changes in the Secondary Xylem of the Living Stem of Four Tree Species in Response to Inoculation with Perenniporia fraxinea

Mikio Ueta, Chiaki Hori, Yutaka Tamai, Yusuke Yamagishi, Toshizumi Miyamoto, Yuzou Sano

J Jpn Wood Sci Soc 64(1) 1-9 (2018)

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Investigation of the Escherichia coli membrane transporters involved in the secretion of D-lactate-based oligomers by loss-of-function screening

Camila Utsunomia, Chiaki Hori, Ken'ichiro Matsumoto, Seiichi Taguchi

JOURNAL OF BIOSCIENCE AND BIOENGINEERING 124(6) 635-640 (2017)

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Synthesis of lactate (LA)-based poly(ester-urethane) using hydroxyl-terminated LA-based oligomers from a microbial secretion system

Camila Utsunomia, Tatsuya Saito, Ken'ichiro Matsumoto, Chiaki Hori, Takuya Isono, Toshifumi Satoh, Seiichi Taguchi

JOURNAL OF POLYMER RESEARCH 24(10) (2017)

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Microbial secretion of lactate-enriched oligomers for efficient conversion into lactide: A biological shortcut to polylactide

Camila Utsunomia, Ken'ichiro Matsumoto, Sakiko Date, Chiaki Hori, Seiichi Taguchi

JOURNAL OF BIOSCIENCE AND BIOENGINEERING 124(2) 204-208 (2017)

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A protease/peptidase from culture medium of Flammulina velutipes that acts on arabinogalactan-protein

Yoshihisa Yoshimi, Yumi Sugawara, Chiaki Hori, Kiyohiko Igarashi, Satoshi Kaneko, Yoichi Tsumuraya, Toshihisa Kotake

BIOSCIENCE BIOTECHNOLOGY AND BIOCHEMISTRY 81(3) 475-481 (2017)

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Discovery of the novel insect-symbiont cellulolytic microbes and biochemical analyses of their enzymes to enhance polysaccharide deconstruction technology

Keisuke Ohashi, Chiaki Hori, Taichi Takasuka
J Jpn Biochem. Soc. 89(5) 739-743 (2017)

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Heterologous Overexpression of Poplar SnRK2 Genes Enhanced Salt Stress Tolerance in Arabidopsis thaliana

Xueqing Song, Xiang Yu, Chiaki Hori, Taku Demura, Misato Ohtani, Qiang Zhuge

FRONTIERS IN PLANT SCIENCE 7 612 (2016)

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森林生態系におけるキバチ共生細菌による木質分解～ノクチリオキバチの木材生分解にかかわる酵素の探索～

高須賀太一, 堀 千明, James Elinger, 飛松裕基

化学と生物 54(3) 156-158 (2016)

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Physical interaction between SnRK2 and PP2C is conserved in Populus trichocarpa

Xueqing Song, Misato Ohtani, Chiaki Hori, Arika Takebayasi, Ryoko Hiroyama, Nur Ardiyana Rejab, Takaomi Suzuki, Taku Demura, Tongming Yin, Xiang Yu, Qiang Zhuge

PLANT BIOTECHNOLOGY 32(4) 337-341 (2015)

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木材腐朽担子菌のゲノム・ポストゲノム解析から植物細胞壁と分解酵素の共進化を考える

堀千明、五十嵐圭日子、鮫島正浩
化学と生物 53(6) 381-388 (2015)

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Analysis of the Phlebiopsis gigantea Genome, Transcriptome and Secretome Provides Insight into Its Pioneer Colonization Strategies of Wood

Chiaki Hori, Takuya Ishida, Kiyohiko Igarashi, Masahiro Samejima, Hitoshi Suzuki, Emma Master, Patricia Ferreira, Francisco J. Ruiz-Duenas, Benjamin Held, Paulo Canessa, Luis F. Larrondo, Monika Schmoll, Irina S. Druzhinina, Christian P. Kubicek, Jill A. Gaskell, Phil Kersten, Franz St John, Jeremy Glasner, Grzegorz Sbat, Sandra Splinter BonDurant, Khajamohiddin Syed, Jagjit Yadav, Anthony C. Mgbeahuruike, Andriy Kovalchuk, Fred O. Asiegbu, Gerald Lackner, Dirk Hoffmeister, Jorge Rencoret, Ana Gutierrez, Hui Sun, Erika Lindquist, Kerrie Barry, Robert Riley, Igor V. Grigoriev, Bernard Henrissat, Ursula Kuees, Randy M. Berka, Angel T. Martinez, Sarah F. Covert, Robert A. Blanchette, Daniel Cullen

PLOS GENETICS 10(12) e1004759 (2014)

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Temporal Alterations in the Secretome of the Selective Ligninolytic Fungus Ceriporiopsis subvermispora during Growth on Aspen Wood Reveal This Organism's Strategy for Degrading Lignocellulose

Chiaki Hori, Jill Gaskell, Kiyohiko Igarashi, Phil Kersten, Michael Mozuch, Masahiro Samejima, Dan Cullen

APPLIED AND ENVIRONMENTAL MICROBIOLOGY 80(7) 2062-2070 (2014)

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Genomewide analysis of polysaccharides degrading enzymes in 11 white- and brown-rot Polyporales provides insight into mechanisms of wood decay

Chiaki Hori, Jill Gaskell, Kiyohiko Igarashi, Masahiro Samejima, David Hibbett, Bernard Henrissat, Dan Cullen

MYCOLOGIA 105(6) 1412-1427 (2013)

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Genome-Wide and Post-Genome Analysis of Wood-Rotting Fungi for Biorefinary.

堀千明, 五十嵐圭日子, 鮫島正浩
Cellul Commun 19(4) 189-194 (2012)

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Comparative genomics of the white-rot fungi, Phanerochaete carnosa and P. chrysosporium, to elucidate the genetic basis of the distinct wood types they colonize

Hitoshi Suzuki, Jacqueline MacDonald, Khajamohiddin Syed, Asaf Salamov, Chiaki Hori, Andrea Aerts, Bernard Henrissat, Ad Wiebenga, Patricia A. vanKuyk, Kerrie Barry, Erika Lindquist, Kurt LaButti, Alla Lapidus, Susan Lucas, Pedro Coutinho, Yunchen Gong, Masahiro Samejima, Radhakrishnan Mahadevan, Mamdouh Abou-Zaid, Ronald P. de Vries, Kiyohiko Igarashi, Jagjit S. Yadav, Igor V. Grigoriev, Emma R. Master

BMC GENOMICS 13 444 (2012)

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First aid for flood-damaged paper using saltwater: The inhibiting effect of saltwater on mold growth

Kenta Higashijima, Chiaki Hori, Kiyohiko Igarashi, Toshiharu Enomae, Akira Isogai

STUDIES IN CONSERVATION 57(3) 164-171 (2012)

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The Paleozoic Origin of Enzymatic Lignin Decomposition Reconstructed from 31 Fungal Genomes

Dimitrios Floudas, Manfred Binder, Robert Riley, Kerrie Barry, Robert A. Blanchette, Bernard Henrissat, Angel T. Martinez, Robert Otillar, Joseph W. Spatafora, Jagjit S. Yadav, Andrea Aerts, Isabelle Benoit, Alex Boyd, Alexis Carlson, Alex Copeland, Pedro M. Coutinho, Ronald P. de Vries, Patricia Ferreira, Keisha Findley, Brian Foster, Jill Gaskell, Dylan Glotzer, Pawel Gorecki, Joseph Heitman, Cedar Hesse, Chiaki Hori, Kiyohiko Igarashi, Joel A. Jurgens, Nathan Kallen, Phil Kersten, Annegret Kohler, Ursula Kuees, T. K. Arun Kumar, Alan Kuo, Kurt LaButti, Luis F. Larrondo, Erika Lindquist, Albee Ling, Vincent Lombard, Susan Lucas, Taina Lundell, Rachael Martin, David J. McLaughlin, Ingo Morgenstern, Emanuelle Morin, Claude Murat, Laszlo G. Nagy, Matt Nolan, Robin A. Ohm, Aleksandrina Patyshakuliyeva, Antonis Rokas, Francisco J. Ruiz-Duenas, Grzegorz Sabat, Asaf Salamov, Masahiro Samejima, Jeremy Schmutz, Jason C. Slot, Franz St. John, Jan Stenlid, Hui Sun, Sheng Sun, Khajamohiddin Syed, Adrian Tsang, Ad Wiebenga, Darcy Young, Antonio Pisabarro, Daniel C. Eastwood, Francis Martin, Dan Cullen, Igor V. Grigoriev, David S. Hibbett

SCIENCE 336(6089) 1715-1719 (2012)

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Transcriptional Response of the Cellobiose Dehydrogenase Gene to Cello- and Xylooligosaccharides in the Basidiomycete Phanerochaete chrysosporium

Chiaki Hori, Hitoshi Suzuki, Kiyohiko Igarashi, Masahiro Samejima

APPLIED AND ENVIRONMENTAL MICROBIOLOGY 78(10) 3770-3773 (2012)

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Comparative genomics of Ceriporiopsis subvermispora and Phanerochaete chrysosporium provide insight into selective ligninolysis

Elena Fernandez-Fueyo, Francisco J. Ruiz-Duenas, Patricia Ferreira, Dimitrios Floudas, David S. Hibbett, Paulo Canessa, Luis F. Larrondo, Tim Y. James, Daniela Seelenfreund, Sergio Lobos, Ruben Polanco, Mario Tello, Yoichi Honda, Takahito Watanabe, Takashi Watanabe, Ryu Jae San, Christian P. Kubicek, Monika Schmoll, Jill Gaskell, Kenneth E. Hammel, Franz J. St John, Amber Vanden Wymelenberg, Grzegorz Sabat, Sandra Splinter BonDurant, Khajamohiddin Syed, Jagjit S. Yadav, Harshavardhan Doddapaneni, Venkataramanan Subramanian, Jose L. Lavin, Jose A. Oguiza, Gumer Perez, Antonio G. Pisabarro, Lucia Ramirez, Francisco Santoyo, Emma Master, Pedro M. Coutinho, Bernard Henrissat, Vincent Lombard, Jon Karl Magnuson, Ursula Kuees, Chiaki Hori, Kiyohiko Igarashi, Masahiro Samejima, Benjamin W. Held, Kerrie W. Barry, Kurt M. LaButti, Alla Lapidus, Erika A. Lindquist, Susan M. Lucas, Robert Riley, Asaf A. Salamov, Dirk Hoffmeister, Daniel Schwenk, Yitzhak Hadar, Oded Yarden, Ronald P. de Vries, Ad Wiebenga, Jan Stenlid, Daniel Eastwood, Igor V. Grigoriev, Randy M. Berka, Robert A. Blanchette, Phil Kersten, Angel T. Martinez, Rafael Vicuna, Dan Cullen

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA 109(14) 5458-5463 (2012)

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Effects of xylan and starch on secretome of the basidiomycete Phanerochaete chrysosporium grown on cellulose

Chiaki Hori, Kiyohiko Igarashi, Akira Katayama, Masahiro Samejima

FEMS MICROBIOLOGY LETTERS 321(1) 14-23

2011年8月

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Secretome Analysis Using Transcriptomic Sequence Database of Flammulina velutipes

Maki Ishiguro, Chiaki Hori, Akira Katayama, Kiyohiko Igarashi, Koji Takabatake, Satoshi Kaneko, Masahiro Samejima

J Jpn Wood Sci Soc 56(6) 388-396

2010年

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Characterization of an endoglucanase belonging to a new subfamily of glycoside hydrolase family 45 of the basidiomycete Phanerochaete chrysosporium

Kiyohiko Igarashi, Takuya Ishida, Chiaki Hori, Masahiro Samejima

APPLIED AND ENVIRONMENTAL MICROBIOLOGY 74(18) 5628-5634 (2008)